Installing and Configuring CMap

Ben Faga1

1 Cold Spring Harbor Laboratories, Cold Spring Harbor, New York
Publication Name:  Current Protocols in Bioinformatics
Unit Number:  Unit 9.8
DOI:  10.1002/0471250953.bi0908s17
Online Posting Date:  March, 2007
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Abstract

CMap is a Web‐based tool for viewing comparisons between biological maps of different types. It allows for correspondences to be displayed between maps as disparate as genetic and physical maps. The protocols in this unit comprise a guide to installing, configuring, and importing data into CMap.

Keywords: CMap; comparative mapping; display

     
 
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Table of Contents

  • Basic Protocol 1: Getting Started with CMap
  • Basic Protocol 2: Creating the CMap Database
  • Basic Protocol 3: Configuring CMap
  • Basic Protocol 4: Creating and Importing Data
  • Basic Protocol 5: Advanced Configuration and Data Manipulation Options
  • Support Protocol 1: Installing CMap
  • Commentary
  • Figures
     
 
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Materials

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Figures

Videos

Literature Cited

Internet Resources
   https://sourceforge.net/project/showfiles.php?group_id=27707
  The location of the CMap package.
   http://www.gramene.org
  The Gramene project Web site for which CMap was initially created.
   http://www.gmod.org
  The Generic Module Organism Database project Web site.
   http://www.gmod.org/cmap
  The CMap home page.
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