Installing a Local Copy of the Reactome Web Site and Knowledgebase

Sheldon J. McKay1, Joel Weiser1

1 Ontario Institute for Cancer Research, Toronto, Ontario
Publication Name:  Current Protocols in Bioinformatics
Unit Number:  Unit 9.10
DOI:  10.1002/0471250953.bi0910s50
Online Posting Date:  June, 2015
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Abstract

The Reactome project builds, maintains, and publishes a knowledgebase of biological pathways. The information in the knowledgebase is gathered from the experts in the field, peer reviewed and edited by Reactome editorial staff, and then published to the Reactome Web site, http://www.reactome.org. The Reactome software is open source and builds on top of other open‐source or freely available software. Reactome data and code can be freely downloaded in its entirety and the Web site installed locally. This allows for more flexible interrogation of the data and also makes it possible to add one's own information to the knowledgebase. © 2015 by John Wiley & Sons, Inc.

     
 
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Table of Contents

  • Introduction
  • Basic Protocol 1: Automated Installation of Reactome Software
  • Basic Protocol 2: Manual Installation of Reactome Software
  • Basic Protocol 3: Using the Pre‐Configured Reactome Amazon Web Services AMI
  • Commentary
  • Literature Cited
  • Figures
     
 
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Materials

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Figures

Videos

Literature Cited

Literature Cited
  Croft, D., Fabregat Mundo, A., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M.R., Jassal, B., Jupe, S., Matthews, L., May, B., Palatnik, S., Rothfels, K., Shamovsky, V., Song, H., Williams, M., Birney, E., Hermjakob, H., Stein, L., and D'Eustachio, P. 2013. The Reactome pathway knowledgebase. Nucleic. Acids Res. 42(Database issue):D472‐D477.
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