Sequence File Format Conversion with Command‐Line Readseq

Don Gilbert1

1 Indiana University, Bloomington, Indiana
Publication Name:  Current Protocols in Bioinformatics
Unit Number:  Appendix 1E
DOI:  10.1002/0471250953.bia01es00
Online Posting Date:  February, 2003
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Abstract

One of the major challenges in using bioinformatics software is that there are a wide variety of sequence formats, e.g., GenBank, EMBL, and FASTA. It is often the case that a sequence or a set of sequences is in one format but is needed in another. This unit offers a solution to this problem ‐ Readseq. Readseq is a program that can read and write 18 different formats

     
 
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Table of Contents

  • Obtaining Readseq
  • Using Readseq Classic for Unix and DOS
  • Sample Sequence Conversions
  • Figures
  • Tables
     
 
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Materials

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Figures

Videos

Literature Cited

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