Bioinformatics Fundamentals
Access Guide to Human Proteinpedia
Babylakshmi Muthusamy, Babylakshmi Muthusamy, Joji Kurian Thomas, Joji Kurian Thomas, T.S. Keshava Prasad, T.S. Keshava Prasad, T.S. Keshava Prasad, Akhilesh Pandey, Akhilesh Pandey
Published online: March 2013
Babylakshmi Muthusamy, Babylakshmi Muthusamy, Joji Kurian Thomas, Joji Kurian Thomas, T.S. Keshava Prasad, T.S. Keshava Prasad, T.S. Keshava Prasad, Akhilesh Pandey, Akhilesh Pandey
Published online: March 2013
Using MEMo to Discover Mutual Exclusivity Modules in Cancer
Giovanni Ciriello, Ethan Cerami, Bulent Arman Aksoy, Chris Sander, Nikolaus Schultz
Published online: March 2013
Giovanni Ciriello, Ethan Cerami, Bulent Arman Aksoy, Chris Sander, Nikolaus Schultz
Published online: March 2013
The UCSC Genome Browser
Donna Karolchik, Angie S. Hinrichs, W. James Kent
Published online: December 2012
Donna Karolchik, Angie S. Hinrichs, W. James Kent
Published online: December 2012
Using the Wash U Epigenome Browser to Examine Genome‐Wide Sequencing Data
Xin Zhou, Ting Wang
Published online: December 2012
Xin Zhou, Ting Wang
Published online: December 2012
Dealing with the Data Deluge: Handling the Multitude of Chemical Biology Data Sources
Rajarshi Guha, Dac‐Trung Nguyen, Noel Southall, Ajit Jadhav
Published online: September 2012
Rajarshi Guha, Dac‐Trung Nguyen, Noel Southall, Ajit Jadhav
Published online: September 2012
Using Cloud Computing Infrastructure with CloudBioLinux, CloudMan, and Galaxy
Enis Afgan, Enis Afgan, Brad Chapman, Margita Jadan, Vedran Franke, James Taylor
Published online: June 2012
Enis Afgan, Enis Afgan, Brad Chapman, Margita Jadan, Vedran Franke, James Taylor
Published online: June 2012
Using the Saccharomyces Genome Database (SGD) for Analysis of Genomic Information
Marek S. Skrzypek, Jodi Hirschman
Published online: September 2011
Marek S. Skrzypek, Jodi Hirschman
Published online: September 2011
The Importance of Biological Databases in Biological Discovery
Andreas D. Baxevanis
Published online: June 2011
Andreas D. Baxevanis
Published online: June 2011
Administering GBrowse Sites with WebGBrowse
Ram Podicheti, Qunfeng Dong
Published online: March 2011
Ram Podicheti, Qunfeng Dong
Published online: March 2011
Next Generation Sequence Assembly with AMOS
Todd J. Treangen, Dan D. Sommer, Florent E. Angly, Florent E. Angly, Sergey Koren, Mihai Pop, Mihai Pop
Published online: March 2011
Todd J. Treangen, Dan D. Sommer, Florent E. Angly, Florent E. Angly, Sergey Koren, Mihai Pop, Mihai Pop
Published online: March 2011
Setting Up the JBrowse Genome Browser
Mitchell E. Skinner, Ian H. Holmes
Published online: December 2010
Mitchell E. Skinner, Ian H. Holmes
Published online: December 2010
Using the Ensembl Genome Server to Browse Genomic Sequence Data
Xosé M. Fernández‐Suárez, Michael K. Schuster
Published online: June 2010
Xosé M. Fernández‐Suárez, Michael K. Schuster
Published online: June 2010
The UCSC Genome Browser: What Every Molecular Biologist Should Know
Mary E. Mangan, Jennifer M. Williams, Robert M. Kuhn, Warren C. Lathe
Published online: October 2009
Mary E. Mangan, Jennifer M. Williams, Robert M. Kuhn, Warren C. Lathe
Published online: October 2009
An Introduction to Sequence Similarity (“Homology”) Searching
Gary D. Stormo
Published online: September 2009
Gary D. Stormo
Published online: September 2009
Finding Similar Nucleotide Sequences Using Network BLAST Searches
Istvan Ladunga
Published online: June 2009
Istvan Ladunga
Published online: June 2009
Beyond Simple Homology Searches: Multiple Sequence Alignments and Phylogenetic Trees
Rebecca A. Zufall
Published online: June 2009
Rebecca A. Zufall
Published online: June 2009



