DNA Analysis

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Computational Methods for Human Microbiome Analysis
Matthieu J. Miossec, Sandro L. Valenzuela, Katterinne N. Mendez, Eduardo Castro‐Nallar
Published online: November 2017
NEBNext Direct: A Novel, Rapid, Hybridization‐Based Approach for the Capture and Library Conversion of Genomic Regions of Interest
Amy B. Emerman, Sarah K. Bowman, Andrew Barry, Noa Henig, Kruti M. Patel, Andrew F. Gardner, Cynthia L. Hendrickson
Published online: July 2017
Finding Similar Nucleotide Sequences Using Network BLAST Searches
Istvan Ladunga
Published online: June 2017
Using FunSeq2 for Coding and Non‐Coding Variant Annotation and Prioritization
Priyanka Dhingra, Yao Fu, Mark Gerstein, Ekta Khurana
Published online: May 2017
Naomi A. Stover, Andre R.O. Cavalcanti
Published online: May 2017
Next‐Generation Sequencing for Identification of EMS‐Induced Mutations in Caenorhabditis elegans
Nicolas J. Lehrbach, Fei Ji, Ruslan Sadreyev
Published online: January 2017
A Microbiome DNA Enrichment Method for Next‐Generation Sequencing Sample Preparation
Erbay Yigit, George R. Feehery, Bradley W. Langhorst, Fiona J. Stewart, Eileen T. Dimalanta, Sriharsa Pradhan, Barton Slatko, Andrew F. Gardner, James McFarland, Christine Sumner, Theodore B. Davis
Published online: July 2016
The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses
Gil Stelzer, Naomi Rosen, Inbar Plaschkes, Shahar Zimmerman, Michal Twik, Simon Fishilevich, Tsippi Iny Stein, Ron Nudel, Iris Lieder, Yaron Mazor, Sergey Kaplan, Dvir Dahary, David Warshawsky, Yaron Guan‐Golan, Asher Kohn, Noa Rappaport, Marilyn Safran, Doron Lancet
Published online: June 2016
Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML
Joseph P. Bielawski, Jennifer L. Baker, Joseph Mingrone
Published online: June 2016
Submitting a Sequence to GenBank
Wei‐Jen Chang, Kassandra E. Zaila, Thomas W. Coppola
Published online: May 2016
Whole‐Genome Sequencing Analysis Using Next‐Generation Sequencing Data
Chi Kent Ho, Xiaohui Cui, Sharon Grubner, Christopher A. Larson, Ying Wei, Paul K. Flook
Published online: May 2016
cgpPindel: Identifying Somatically Acquired Insertion and Deletion Events from Paired End Sequencing
Keiran M. Raine, Jonathan Hinton, Adam P. Butler, Jon W. Teague, Helen Davies, Patrick Tarpey, Serena Nik‐Zainal, Peter J. Campbell
Published online: December 2015
VAGrENT: Variation Annotation Generator
Andy Menzies, Jon W. Teague, Adam P. Butler, Helen Davies, Patrick Tarpey, Serena Nik‐Zainal, Peter J. Campbell
Published online: December 2015
DNA Motif Databases and Their Uses
Gary D. Stormo
Published online: September 2015
Using RAxML to Infer Phylogenies
Alexandros Stamatakis
Published online: September 2015
Noninvasive Prenatal Testing Using Cell‐Free Fetal DNA in Maternal Plasma
Nilesh Dharajiya, Tricia Zwiefelhofer, Xiaojun Guan, Vach Angkachatchai, Juan‐Sebastian Saldivar
Published online: January 2015
ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide
Jason D. Buenrostro, Beijing Wu, Howard Y. Chang, William J. Greenleaf
Published online: January 2015
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