Finding Similarities and Inferring Homologies

Listings: 1-20   21-40   41-42
Alphabetical     Date
Protein Databases on the Internet
Dong Xu
Published online: November 2012
Using BLAT to Find Sequence Similarity in Closely Related Genomes
Medha Bhagwat, Lynn Young, Rex R. Robison
Published online: March 2012
Protein Databases on the Internet
Dong Xu
Published online: January 2012
Identification of Novel and Known miRNAs in Deep‐Sequencing Data with miRDeep2
Sebastian D. Mackowiak
Published online: December 2011
Protein Structural Domains: Definition and Prediction
Iakes Ezkurdia, Michael L. Tress
Published online: November 2011
Survey of Protein Engineering Strategies
Uwe Bornscheuer, Romas J. Kazlauskas
Published online: November 2011
Using OrthoMCL to Assign Proteins to OrthoMCL‐DB Groups or to Cluster Proteomes Into New Ortholog Groups
Steve Fischer, Steve Fischer, Brian P. Brunk, Brian P. Brunk, Feng Chen, Xin Gao, Xin Gao, Omar S. Harb, Omar S. Harb, John B. Iodice, John B. Iodice, Dhanasekaran Shanmugam, David S. Roos, Christian J. Stoeckert, Christian J. Stoeckert
Published online: September 2011
Inferring Protein Function from Homology Using the Princeton Protein Orthology Database (P‐POD)
Michael S. Livstone, Rose Oughtred, Sven Heinicke, Benjamin Vernot, Benjamin Vernot, Curtis Huttenhower, Dannie Durand, Dannie Durand, Kara Dolinski
Published online: March 2011
Next Generation Sequence Assembly with AMOS
Todd J. Treangen, Dan D. Sommer, Florent E. Angly, Florent E. Angly, Sergey Koren, Mihai Pop, Mihai Pop
Published online: March 2011
Searching NCBI's dbSNP Database
Medha Bhagwat
Published online: December 2010
Aligning Short Sequencing Reads with Bowtie
Ben Langmead
Published online: December 2010
Using the Generic Synteny Browser (GBrowse_syn)
Sheldon J. McKay, Sheldon J. McKay, Ismael A. Vergara, Jason E. Stajich
Published online: September 2010
MultiPipMaker: A Comparative Alignment Server for Multiple DNA Sequences
Laura Elnitski, Richard Burhans, Cathy Riemer, Ross Hardison, Webb Miller
Published online: June 2010
Using the DFCI Gene Index Databases for Biological Discovery
Corina Antonescu, Valentin Antonescu, Razvan Sultana, John Quackenbush
Published online: March 2010
Computing Multiple Sequence/Structure Alignments with the T‐Coffee Package
Cedric Notredame
Published online: March 2010
An Introduction to Sequence Similarity (“Homology”) Searching
Gary D. Stormo
Published online: September 2009
Finding Similar Nucleotide Sequences Using Network BLAST Searches
Istvan Ladunga
Published online: June 2009
Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
Igor Ratnere, Inna Dubchak
Published online: June 2009
Using NCBI BLAST
Nicholas A. Stover, Andre R.O. Cavalcanti
Published online: June 2009
Using Model Organism Databases (MODs)
Stacia R. Engel
Published online: June 2009
Listings: 1-20   21-40   41-42