Phylogenetic Trees

Listings: 1-20   21-22
Alphabetical     Date
Phylogenetic Inference Using RevBayes
Sebastian Höhna, Michael J. Landis, Tracy A. Heath
Published online: May 2017
Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML
Joseph P. Bielawski, Jennifer L. Baker, Joseph Mingrone
Published online: June 2016
Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families
Lars Barquist, Sarah W. Burge, Paul P. Gardner
Published online: June 2016
Use of In Situ Proximity Ligation Assays for Systems Analysis of Signaling Pathways
Tzu‐Chi Chen, Chi‐Ying F. Huang
Published online: June 2016
Using RAxML to Infer Phylogenies
Alexandros Stamatakis
Published online: September 2015
Bioinformatics Protocols in Glycomics and Glycoproteomics
Haixu Tang, Anoop Mayampurath, Chuan‐Yih Yu, Yehia Mechref
Published online: April 2014
Phylogenetic Analysis with the iPlant Discovery Environment
Naim Matasci, Sheldon McKay
Published online: June 2013
Detecting the Signatures of Adaptive Evolution in Protein‐Coding Genes
Joseph P. Bielawski
Published online: January 2013
Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Justin Kuczynski, Jesse Stombaugh, William Anton Walters, Antonio González, J. Gregory Caporaso, Rob Knight
Published online: November 2012
Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Justin Kuczynski, Jesse Stombaugh, William Anton Walters, Antonio González, J. Gregory Caporaso, Rob Knight
Published online: December 2011
Using OrthoMCL to Assign Proteins to OrthoMCL‐DB Groups or to Cluster Proteomes Into New Ortholog Groups
Steve Fischer, Brian P. Brunk, Feng Chen, Xin Gao, Omar S. Harb, John B. Iodice, Dhanasekaran Shanmugam, David S. Roos, Christian J. Stoeckert
Published online: September 2011
Inferring Protein Function from Homology Using the Princeton Protein Orthology Database (P‐POD)
Michael S. Livstone, Rose Oughtred, Sven Heinicke, Benjamin Vernot, Curtis Huttenhower, Dannie Durand, Kara Dolinski
Published online: March 2011
Installing and Configuring CMap
Ben Faga
Published online: March 2007
Getting a Tree Fast: Neighbor Joining, FastME, and Distance‐Based Methods
Richard Desper, Olivier Gascuel
Published online: October 2006
Phylogenomic Inference of Protein Molecular Function
Nandini Krishnamurthy, Kimmen Sjölander
Published online: October 2005
Using PEBBLE for the Evolutionary Analysis of Serially Sampled Molecular Sequences
Matthew Goode, Allen G. Rodrigo
Published online: May 2004
Inferring Evolutionary Trees with PAUP*
James C. Wilgenbusch, David Swofford
Published online: February 2003
Listings: 1-20   21-22