Recognizing Functional Domains
Detecting the Signatures of Adaptive Evolution in Protein‐Coding Genes
Joseph P. Bielawski
Published online: January 2013
Joseph P. Bielawski
Published online: January 2013
Identifying Functional Annotation for Noncoding Genomic Sequences
Douglas P. Mortlock, Douglas P. Mortlock, Steven Pregizer, Steven Pregizer
Published online: January 2012
Douglas P. Mortlock, Douglas P. Mortlock, Steven Pregizer, Steven Pregizer
Published online: January 2012
Using the scan‐x Web Site to Predict Protein Post‐Translational Modifications
Michael F. Chou, Daniel Schwartz
Published online: December 2011
Michael F. Chou, Daniel Schwartz
Published online: December 2011
Protein Structural Domains: Definition and Prediction
Iakes Ezkurdia, Michael L. Tress
Published online: November 2011
Iakes Ezkurdia, Michael L. Tress
Published online: November 2011
Survey of Protein Engineering Strategies
Uwe Bornscheuer, Romas J. Kazlauskas
Published online: November 2011
Uwe Bornscheuer, Romas J. Kazlauskas
Published online: November 2011
Gene Identification in Prokaryotic Genomes, Phages, Metagenomes, and EST Sequences with GeneMarkS Suite
Mark Borodovsky, Alex Lomsadze
Published online: September 2011
Mark Borodovsky, Alex Lomsadze
Published online: September 2011
Eukaryotic Gene Prediction Using GeneMark.hmm‐E and GeneMark‐ES
Mark Borodovsky, Alex Lomsadze
Published online: September 2011
Mark Borodovsky, Alex Lomsadze
Published online: September 2011
Biological Sequence Motif Discovery Using motif‐x
Michael F. Chou, Daniel Schwartz
Published online: September 2011
Michael F. Chou, Daniel Schwartz
Published online: September 2011
Using MACS to Identify Peaks from ChIP‐Seq Data
Jianxing Feng, Tao Liu, Yong Zhang
Published online: June 2011
Jianxing Feng, Tao Liu, Yong Zhang
Published online: June 2011
Using CisGenome to Analyze ChIP‐chip and ChIP‐seq Data
Hongkai Ji, Hui Jiang, Wenxiu Ma, Wing Hung Wong
Published online: March 2011
Hongkai Ji, Hui Jiang, Wenxiu Ma, Wing Hung Wong
Published online: March 2011
Extracting Biological Meaning from Large Gene Lists with DAVID
Da Wei Huang, Brad T. Sherman, Xin Zheng, Jun Yang, Tomozumi Imamichi, Robert Stephens, Richard A. Lempicki
Published online: September 2009
Da Wei Huang, Brad T. Sherman, Xin Zheng, Jun Yang, Tomozumi Imamichi, Robert Stephens, Richard A. Lempicki
Published online: September 2009
Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
Igor Ratnere, Inna Dubchak
Published online: June 2009
Igor Ratnere, Inna Dubchak
Published online: June 2009
Identifying Protein Domains with the Pfam Database
Penny Coggill, Robert D. Finn, Alex Bateman
Published online: September 2008
Penny Coggill, Robert D. Finn, Alex Bateman
Published online: September 2008
Using TESS to Predict Transcription Factor Binding Sites in DNA Sequence
Jonathan Schug
Published online: March 2008
Jonathan Schug
Published online: March 2008
The InterPro Database and Tools for Protein Domain Analysis
Nicola J. Mulder, Rolf Apweiler
Published online: March 2008
Nicola J. Mulder, Rolf Apweiler
Published online: March 2008
Using Weeder for the Discovery of Conserved Transcription Factor Binding Sites
Giulio Pavesi, Graziano Pesole
Published online: October 2006
Giulio Pavesi, Graziano Pesole
Published online: October 2006



