RNA Analysis

Listings: 1-20   21-40   41-42
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Data Analysis Pipeline for RNA‐seq Experiments: From Differential Expression to Cryptic Splicing
Hari Krishna Yalamanchili, Ying‐Wooi Wan, Zhandong Liu
Published online: September 2017
Profiling of Single‐Cell Transcriptomes
Wanze Chen, Vincent Gardeux, Antonio Meireles‐Filho, Bart Deplancke
Published online: September 2017
Using the NONCODE Database Resource
Li Xiyuan, Bu Dechao, Sun Liang, Wu Yang, Fang Shuangsang, Li Hui, Luo Haitao, Luo Chunlong, Fang Wenzheng, Chen Runsheng, Zhao Yi
Published online: June 2017
Using 3dRNA for RNA 3‐D Structure Prediction and Evaluation
Jian Wang, Yi Xiao
Published online: May 2017
DIANA‐TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou
Published online: September 2016
Obtaining miRNA‐Target Interaction Information from miRWalk2.0
Alisha Parveen, Norbert Gretz, Harsh Dweep
Published online: September 2016
Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families
Lars Barquist, Sarah W. Burge, Paul P. Gardner
Published online: June 2016
Alternative Splicing Signatures in RNA‐seq Data: Percent Spliced in (PSI)
Sebastian Schafer, Kui Miao, Craig C. Benson, Matthias Heinig, Stuart A. Cook, Norbert Hubner
Published online: October 2015
Transcriptome‐Wide Identification of Pseudouridine Modifications Using Pseudo‐seq
Thomas M. Carlile, Maria F. Rojas‐Duran, Wendy V. Gilbert
Published online: October 2015
Mapping RNA‐seq Reads with STAR
Alexander Dobin, Thomas R. Gingeras
Published online: September 2015
RNASeq in C. elegans Following Manganese Exposure
Nancy L. Parmalee, Shahina B. Maqbool, Bin Ye, Brent Calder, Aaron B. Bowman, Michael Aschner
Published online: August 2015
Using REDItools to Detect RNA Editing Events in NGS Datasets
Ernesto Picardi, Anna Maria D'Erchia, Antonio Montalvo, Graziano Pesole
Published online: March 2015
Resources for Small Regulatory RNAs
George W. Bell, Fran Lewitter
Published online: July 2014
RNA Secondary Structure Analysis Using RNAstructure
David H. Mathews
Published online: June 2014
Next‐Generation Sequencing RNA‐Seq Library Construction
Jessica Podnar, Heather Deiderick, Gabriella Huerta, Scott Hunicke‐Smith
Published online: April 2014
RAMPAGE: Promoter Activity Profiling by Paired‐End Sequencing of 5′‐Complete cDNAs
Philippe Batut, Thomas R. Gingeras
Published online: November 2013
RNA Structure Analysis of Viruses Using SHAPE
Cecily P. Burrill, Raul Andino
Published online: October 2013
Genome‐Wide Annotation and Quantitation of Translation by Ribosome Profiling
Nicholas T. Ingolia, Gloria A. Brar, Silvia Rouskin, Anna M. McGeachy, Jonathan S. Weissman
Published online: July 2013
Listings: 1-20   21-40   41-42