Genome Variation

Alphabetical     Date
Using FunSeq2 for Coding and Non‐Coding Variant Annotation and Prioritization
Priyanka Dhingra, Yao Fu, Mark Gerstein, Ekta Khurana
Published online: May 2017
ascatNgs: Identifying Somatically Acquired Copy‐Number Alterations from Whole‐Genome Sequencing Data
Keiran M. Raine, Peter Van Loo, David C. Wedge, David Jones, Andrew Menzies, Adam P. Butler, Jon W. Teague, Patrick Tarpey, Serena Nik‐Zainal, Peter J. Campbell
Published online: December 2016
cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data
David Jones, Keiran M. Raine, Helen Davies, Patrick S. Tarpey, Adam P. Butler, Jon W. Teague, Serena Nik‐Zainal, Peter J. Campbell
Published online: December 2016
The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses
Gil Stelzer, Naomi Rosen, Inbar Plaschkes, Shahar Zimmerman, Michal Twik, Simon Fishilevich, Tsippi Iny Stein, Ron Nudel, Iris Lieder, Yaron Mazor, Sergey Kaplan, Dvir Dahary, David Warshawsky, Yaron Guan‐Golan, Asher Kohn, Noa Rappaport, Marilyn Safran, Doron Lancet
Published online: June 2016
Use of In Situ Proximity Ligation Assays for Systems Analysis of Signaling Pathways
Tzu‐Chi Chen, Chi‐Ying F. Huang
Published online: June 2016
cgpPindel: Identifying Somatically Acquired Insertion and Deletion Events from Paired End Sequencing
Keiran M. Raine, Jonathan Hinton, Adam P. Butler, Jon W. Teague, Helen Davies, Patrick Tarpey, Serena Nik‐Zainal, Peter J. Campbell
Published online: December 2015
VAGrENT: Variation Annotation Generator
Andy Menzies, Jon W. Teague, Adam P. Butler, Helen Davies, Patrick Tarpey, Serena Nik‐Zainal, Peter J. Campbell
Published online: December 2015
Interpreting de novo Variation in Human Disease Using denovolyzeR
James S. Ware, Kaitlin E. Samocha, Jason Homsy, Mark J. Daly
Published online: October 2015