Chromatin Assembly and Analysis
A Detailed Protocol for Formaldehyde‐Assisted Isolation of Regulatory Elements (FAIRE)
Jeremy M. Simon, Jeremy M. Simon, Jeremy M. Simon, Paul G. Giresi, Ian J. Davis, Ian J. Davis, Ian J. Davis, Ian J. Davis, Jason D. Lieb, Jason D. Lieb, Jason D. Lieb, Jason D. Lieb
Published online: April 2013
Jeremy M. Simon, Jeremy M. Simon, Jeremy M. Simon, Paul G. Giresi, Ian J. Davis, Ian J. Davis, Ian J. Davis, Ian J. Davis, Jason D. Lieb, Jason D. Lieb, Jason D. Lieb, Jason D. Lieb
Published online: April 2013
ChIP‐exo Method for Identifying Genomic Location of DNA‐Binding Proteins with Near‐Single‐Nucleotide Accuracy
Ho Sung Rhee, B. Franklin Pugh
Published online: October 2012
Ho Sung Rhee, B. Franklin Pugh
Published online: October 2012
Simultaneous Single‐Molecule Mapping of Protein‐DNA Interactions and DNA Methylation by MAPit
Carolina E. Pardo, Russell P. Darst, Nancy H. Nabilsi, Amber L. Delmas, Michael P. Kladde
Published online: July 2011
Carolina E. Pardo, Russell P. Darst, Nancy H. Nabilsi, Amber L. Delmas, Michael P. Kladde
Published online: July 2011
Using MACS to Identify Peaks from ChIP‐Seq Data
Jianxing Feng, Tao Liu, Yong Zhang
Published online: June 2011
Jianxing Feng, Tao Liu, Yong Zhang
Published online: June 2011
DamIP: Using Mutant DNA Adenine Methyltransferase to Study DNA‐Protein Interactions In Vivo
Rui Xiao, David D. Moore
Published online: April 2011
Rui Xiao, David D. Moore
Published online: April 2011
Genome‐Wide Location Analysis by Pull Down of In Vivo Biotinylated Transcription Factors
Aibin He, Aibin He, William T. Pu, William T. Pu
Published online: October 2010
Aibin He, Aibin He, William T. Pu, William T. Pu
Published online: October 2010
ChIP‐Seq: A Method for Global Identification of Regulatory Elements in the Genome
Debasish Raha, Miyoung Hong, Michael Snyder
Published online: July 2010
Debasish Raha, Miyoung Hong, Michael Snyder
Published online: July 2010
Installation of Site‐Specific Methylation into Histones Using Methyl Lysine Analogs
Matthew D. Simon
Published online: April 2010
Matthew D. Simon
Published online: April 2010
Chromatin Interaction Analysis Using Paired‐End Tag Sequencing
Melissa J. Fullwood, Yuyuan Han, Chia‐Lin Wei, Xiaoan Ruan, Yijun Ruan
Published online: January 2010
Melissa J. Fullwood, Yuyuan Han, Chia‐Lin Wei, Xiaoan Ruan, Yijun Ruan
Published online: January 2010
Mapping Networks of Protein‐Mediated Physical Interactions Between Chromatin Elements
Vijay K. Tiwari, Stephen B. Baylin
Published online: January 2010
Vijay K. Tiwari, Stephen B. Baylin
Published online: January 2010
Methylation‐Sensitive Single‐Molecule Analysis of Chromatin Structure
Tina B. Miranda, Theresa K. Kelly, Karim Bouazoune, Peter A. Jones
Published online: January 2010
Tina B. Miranda, Theresa K. Kelly, Karim Bouazoune, Peter A. Jones
Published online: January 2010
Chromosome Conformation Capture Carbon Copy Technology
Josée Dostie, Josée Dostie, Ye Zhan, Job Dekker
Published online: October 2007
Josée Dostie, Josée Dostie, Ye Zhan, Job Dekker
Published online: October 2007
Paired‐End diTagging for Transcriptome and Genome Analysis
Patrick Ng, Chia‐Lin Wei, Yijun Ruan
Published online: July 2007
Patrick Ng, Chia‐Lin Wei, Yijun Ruan
Published online: July 2007
ChIP‐chip for Genome‐Wide Analysis of Protein Binding in Mammalian Cells
Tae Hoon Kim, Leah O. Barrera, Bing Ren, Bing Ren
Published online: July 2007
Tae Hoon Kim, Leah O. Barrera, Bing Ren, Bing Ren
Published online: July 2007
Mapping Chromatin Interactions by Chromosome Conformation Capture
Adriana Miele, Nele Gheldof, Tomoko M. Tabuchi, Josée Dostie, Job Dekker
Published online: May 2006
Adriana Miele, Nele Gheldof, Tomoko M. Tabuchi, Josée Dostie, Job Dekker
Published online: May 2006
Identifying Chromosomal Targets of DNA‐Binding Proteins by Sequence Tag Analysis of Genomic Enrichment (STAGE)
Jonghwan Kim, Vishwanath R. Iyer
Published online: November 2005
Jonghwan Kim, Vishwanath R. Iyer
Published online: November 2005
Analysis of Protein Co‐Occupancy by Quantitative Sequential Chromatin Immunoprecipitation
Joseph V. Geisberg, Kevin Struhl
Published online: May 2005
Joseph V. Geisberg, Kevin Struhl
Published online: May 2005
Chromatin Immunoprecipitation for Determining the Association of Proteins with Specific Genomic Sequences In Vivo
Oscar Aparicio, Joseph V. Geisberg, Edward Sekinger, Annie Yang, Zarmik Moqtaderi, Kevin Struhl
Published online: February 2005
Oscar Aparicio, Joseph V. Geisberg, Edward Sekinger, Annie Yang, Zarmik Moqtaderi, Kevin Struhl
Published online: February 2005
Defining In Vivo Targets of Nuclear Proteins by Chromatin Immunoprecipitation and Microarray Analysis
Zarmik Moqtaderi, Kevin Struhl
Published online: November 2004
Zarmik Moqtaderi, Kevin Struhl
Published online: November 2004



