Informatics

Alphabetical     Date
Multiplex Illumina Sequencing Using DNA Barcoding
Koon Ho Wong, Yi Jin, Zarmik Moqtaderi
Published online: January 2013
Protein Databases on the Internet
Dong Xu
Published online: November 2012
Comparative ncRNA Gene and Structure Prediction Using Foldalign and FoldalignM
Jakob Havgaard, Simranjeet Kaur, Jan Gorodkin
Published online: September 2012
Gene Assembly from Chip‐Synthesized Oligonucleotides
Nikolai Eroshenko, Nikolai Eroshenko, Sriram Kosuri, Sriram Kosuri, Sriram Kosuri, Adam H. Marblestone, Adam H. Marblestone, Nicholas Conway, George M. Church, George M. Church
Published online: March 2012
DNA Origami: Synthesis and Self‐Assembly
Arivazhagan Rajendran, Arivazhagan Rajendran, Masayuki Endo, Masayuki Endo, Hiroshi Sugiyama, Hiroshi Sugiyama, Hiroshi Sugiyama
Published online: March 2012
Protein Databases on the Internet
Dong Xu
Published online: January 2012
Gene Identification in Prokaryotic Genomes, Phages, Metagenomes, and EST Sequences with GeneMarkS Suite
Mark Borodovsky, Alex Lomsadze
Published online: September 2011
Eukaryotic Gene Prediction Using GeneMark.hmm‐E and GeneMark‐ES
Mark Borodovsky, Alex Lomsadze
Published online: September 2011
Using MACS to Identify Peaks from ChIP‐Seq Data
Jianxing Feng, Tao Liu, Yong Zhang
Published online: June 2011
Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists
Daniel Blankenberg, Daniel Blankenberg, Gregory Von Kuster, Gregory Von Kuster, Nathaniel Coraor, Nathaniel Coraor, Guruprasad Ananda, Guruprasad Ananda, Ross Lazarus, Ross Lazarus, Mary Mangan, Anton Nekrutenko, Anton Nekrutenko, James Taylor, James Taylor
Published online: January 2010
Protein Identification Using Sorcerer 2 and SEQUEST
Deborah H. Lundgren, Harryl Martinez, Michael E. Wright, David K. Han
Published online: December 2009
Example of Use of TaqMan Real‐Time RT‐PCR to Analyze Bacterial Gene Transcript Levels: Haemophilus influenzae
Jason W. Johnston
Published online: November 2009
Analyzing Gene Expression Data from Microarray and Next‐Generation DNA Sequencing Transcriptome Profiling Assays Using GeneSifter Analysis Edition
Sandra Porter, Sandra Porter, N. Eric Olson, Todd Smith
Published online: September 2009
RNA Secondary Structure Analysis Using the Vienna RNA Package
Ivo L. Hofacker
Published online: June 2009
Using PATIMDB to Create Bacterial Transposon Insertion Mutant Libraries
Jonathan M. Urbach, Tao Wei, Nicole Liberati, Daniel Grenfell‐Lee, Jacinto Villanueva, Gang Wu, Frederick M. Ausubel
Published online: April 2009
Pattern Discovery in Expression Profiling Data
Fumiaki Katagiri, Jane Glazebrook
Published online: January 2009
Basic Protein Sequence Analysis
Nandini Krishnamurthy, Kimmen V. Sjölander
Published online: May 2005
Sequence Databases: Integrated Information Retrieval and Data Submission
Jane M. Weisemann, Mark S. Boguski, B.F. Francis Ouellette
Published online: May 2001
Sequence Similarity Searching Using the BLAST Family of Programs
Tyra G. Wolfsberg, Thomas L. Madden
Published online: May 2001
Sequence Similarity Searching Using the BLAST Family of Programs
Tyra G. Wolfsberg, Thomas L. Madden
Published online: May 2001