Informatics

Alphabetical     Date
Transcriptome‐Wide Identification of Pseudouridine Modifications Using Pseudo‐seq
Thomas M. Carlile, Maria F. Rojas‐Duran, Wendy V. Gilbert
Published online: October 2015
Mapping RNA‐seq Reads with STAR
Alexander Dobin, Thomas R. Gingeras
Published online: September 2015
Using REDItools to Detect RNA Editing Events in NGS Datasets
Ernesto Picardi, Anna Maria D'Erchia, Antonio Montalvo, Graziano Pesole
Published online: March 2015
RAMPAGE: Promoter Activity Profiling by Paired‐End Sequencing of 5′‐Complete cDNAs
Philippe Batut, Thomas R. Gingeras
Published online: November 2013
Capture Hybridization Analysis of RNA Targets (CHART)
Matthew D. Simon
Published online: January 2013
Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Justin Kuczynski, Jesse Stombaugh, William Anton Walters, Antonio González, J. Gregory Caporaso, Rob Knight
Published online: November 2012
Comparative ncRNA Gene and Structure Prediction Using Foldalign and FoldalignM
Jakob Havgaard, Simranjeet Kaur, Jan Gorodkin
Published online: September 2012
Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Justin Kuczynski, Jesse Stombaugh, William Anton Walters, Antonio González, J. Gregory Caporaso, Rob Knight
Published online: December 2011
Quantification of Gene Transcripts with Deep Sequencing Analysis of Gene Expression (DSAGE) Using 1 to 2 µg Total RNA
Danos C. Christodoulou, Joshua M. Gorham, Masataka Kawana, Steven R. DePalma, Daniel S. Herman, Hiroko Wakimoto
Published online: January 2011
miRBase: microRNA Sequences and Annotation
Sam Griffiths‐Jones
Published online: March 2010
Identifying Structural Noncoding RNAs Using RNAz
Stefan Washietl, Ivo L. Hofacker
Published online: September 2007
Annotating Non‐Coding RNAs with Rfam
Sam Griffiths‐Jones
Published online: April 2005
RNAi: Design and Analysis
Ravi Sachidanandam
Published online: September 2004
Overview of Purification and Analysis of Synthetic Nucleic Acids
Alex Andrus, Robert G. Kuimelis
Published online: May 2001