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21 matches found for in categories Genetics and Genomics in publications Current Protocols in Bioinformatics
Viewing and Editing Assembled Sequences Using Consed
Author(s): David Gordon
Publication Date: August 01, 2003
Source: Current Protocols in Bioinformatics
Generating a Genome Assembly with PCAP
Author(s): Xiaoqiu Huang, Shiaw‐Pyng Yang
Publication Date: October 01, 2005
Source: Current Protocols in Bioinformatics
Assembling Genomic DNA Sequences with PHRAP
Author(s): Melissa de la Bastide, W. Richard McCombie
Publication Date: March 01, 2007
Source: Current Protocols in Bioinformatics
Using OrthoCluster for the Detection of Synteny Blocks Among Multiple Genomes
Author(s): Ismael A. Vergara, Nansheng Chen
Publication Date: September 01, 2009
Source: Current Protocols in Bioinformatics
Analyzing Gene Expression Data from Microarray and Next‐Generation DNA Sequencing Transcriptome Profiling Assays Using GeneSifter Analysis Edition
Author(s): Sandra Porter, N. Eric Olson, Todd Smith
Publication Date: September 01, 2009
Source: Current Protocols in Bioinformatics
Extracting Biological Meaning from Large Gene Lists with DAVID
Author(s): Da Wei Huang, Brad T. Sherman, Xin Zheng, Jun Yang, Tomozumi Imamichi, Robert Stephens, Richard A. Lempicki
Publication Date: September 01, 2009
Source: Current Protocols in Bioinformatics
Setting Up the JBrowse Genome Browser
Author(s): Mitchell E. Skinner, Ian H. Holmes
Publication Date: December 01, 2010
Source: Current Protocols in Bioinformatics
Using CisGenome to Analyze ChIP‐chip and ChIP‐seq Data
Author(s): Hongkai Ji, Hui Jiang, Wenxiu Ma, Wing Hung Wong
Publication Date: March 01, 2011
Source: Current Protocols in Bioinformatics
Using MACS to Identify Peaks from ChIP‐Seq Data
Author(s): Jianxing Feng, Tao Liu, Yong Zhang
Publication Date: June 01, 2011
Source: Current Protocols in Bioinformatics
Gene Identification in Prokaryotic Genomes, Phages, Metagenomes, and EST Sequences with GeneMarkS Suite
Author(s): Mark Borodovsky, Alex Lomsadze
Publication Date: September 01, 2011
Source: Current Protocols in Bioinformatics
Eukaryotic Gene Prediction Using GeneMark.hmm‐E and GeneMark‐ES
Author(s): Mark Borodovsky, Alex Lomsadze
Publication Date: September 01, 2011
Source: Current Protocols in Bioinformatics
Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Author(s): Justin Kuczynski, Jesse Stombaugh, William Anton Walters, Antonio González, J. Gregory Caporaso, Rob Knight
Publication Date: December 01, 2011
Source: Current Protocols in Bioinformatics
An Introduction to the Informatics of “Next‐Generation” Sequencing
Author(s): Lincoln D. Stein
Publication Date: December 01, 2011
Source: Current Protocols in Bioinformatics
Searching Online Mendelian Inheritance in Man (OMIM) for Information on Genetic Loci Involved in Human Disease
Author(s): Andreas D. Baxevanis
Publication Date: March 01, 2012
Source: Current Protocols in Bioinformatics
Using BLAT to Find Sequence Similarity in Closely Related Genomes
Author(s): Medha Bhagwat, Lynn Young, Rex R. Robison
Publication Date: March 01, 2012
Source: Current Protocols in Bioinformatics
The Human Gene Mutation Database (HGMD) and Its Exploitation in the Fields of Personalized Genomics and Molecular Evolution
Author(s): Peter D. Stenson, Edward V. Ball, Matthew Mort, Andrew D. Phillips, Katy Shaw, David N. Cooper
Publication Date: September 01, 2012
Source: Current Protocols in Bioinformatics
Some Phenotype Association Tools in Galaxy: Looking for Disease SNPs in a Full Genome
Author(s): Belinda M. Giardine, Cathy Riemer, Richard Burhans, Aakrosh Ratan, Webb Miller
Publication Date: September 01, 2012
Source: Current Protocols in Bioinformatics
Genotyping in the Cloud with Crossbow
Author(s): James Gurtowski, Michael C. Schatz, Ben Langmead
Publication Date: September 01, 2012
Source: Current Protocols in Bioinformatics
Exploring Genetic, Genomic, and Phenotypic Data at the Rat Genome Database
Author(s): Stanley J. F. Laulederkind, G. Thomas Hayman, Shur‐Jen Wang, Timothy F. Lowry, Rajni Nigam, Victoria Petri, Jennifer R. Smith, Melinda R. Dwinell, Howard J. Jacob, Mary Shimoyama
Publication Date: December 01, 2012
Source: Current Protocols in Bioinformatics
Pathway‐Based Analysis of Microarray and RNAseq Data Using Pathway Processor 2.0
Author(s): Luca Beltrame, Luca Bianco, Paolo Fontana, Duccio Cavalieri
Publication Date: March 01, 2013
Source: Current Protocols in Bioinformatics
Using MEMo to Discover Mutual Exclusivity Modules in Cancer
Author(s): Giovanni Ciriello, Ethan Cerami, Bulent Arman Aksoy, Chris Sander, Nikolaus Schultz
Publication Date: March 01, 2013
Source: Current Protocols in Bioinformatics