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Production of Recombinant Proteins in Mammalian Cells

Su Chen1,  David Gray1,  Johnny Ma1,  Shyamsundar Subramanian1

1Chiron Corporation, Emeryville, California

Unit Number: 
Unit 5.10
DOI: 
10.1002/0471140864.ps0510s12
Online Posting Date: 
May, 2001
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Abstract

The best strategy for consistent production of larger quantities of pure protein is stable expression. Popular hosts for stable expression are Chinese hamster ovary (CHO) cells, baby hamster kidney (BHK-21) cells, myeloma cells, and the transformed kidney cell line 293. Protocols for stable production in CHO cells are described in this unit. Typical methods for transfection using commercially available plasmid expression vectors are described, along with methods to select for stable expression and methods for amplifying the expression level in the transfected cell. Following this, procedures are presented for efficient cell growth to obtain significant amounts of protein product. Support protocols describe freezing of cells, determination of growth rates, determination of specific productivity of cells, preparing samples for assay, and setting up a 10-day shaker-flask growth curve.

     
 
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Table of Contents

  • Unit Introduction
  • Basic Protocol 1: Plasmid Purification by Alkaline-Lysis/Anion-Exchange Capture
  • Basic Protocol 2: Transfection of Cells by Lipofection
  • Alternate Protocol 1: Transfection of Cells by Electroporation
  • Basic Protocol 3: Selection for Neomycin Phosphotransferase (NPTII) with Geneticin (G418)
  • Support Protocol 1: Determination of Background Sensitivity to G418
  • Alternate Protocol 2: Screening of Green Fluorescent Protein by Flow Cytometry
  • Support Protocol 2: Single-Cell Cloning
  • Basic Protocol 4: Amplification of Dihydrofolate Reductase (DHFR) with Methotrexate (MTX)
  • Basic Protocol 5: Adaptation of Suspension Cells to Production Medium Through Multiple Passaging
  • Basic Protocol 6: Growth of Cells in Batch Mode in Large-Scale Spinner Culture Vessels
  • Basic Protocol 7: Growth of Cells in Large-Scale Batch Reactors
  • Alternate Protocol 3: Growth of Cells in Continuous Culture in Bioreactors
  • Harvesting of Protein Product from Batch Mode Spinner Cultures and Large-Scale Batch Reactors
  • Basic Protocol 8: Harvesting a Secreted Product
  • Basic Protocol 9: Harvesting a Cell-Associated Product
  • Support Protocol 3: Freezing Cells for Produciton of Cell Banks
  • Support Protocol 4: Numerical Determination of Specific Growth Rate of Cells
  • Support Protocol 5: Graphical Determination of Specific Growth Rate of Cells
  • Support Protocol 6: Numerical Determination of Specific Productivity of Cells Producing Heterologous Protein
  • Support Protocol 7: Graphical Determination of Specific Productivity of Cells Producing Heterologous Protein
  • Support Protocol 8: Preparation of Samples for Product Assay
  • Support Protocol 9: Determination of Shaker Flask Growth Curve
  • Reagents and Solutions
  • Commentary
  • Bibliography
  • Figures
  • Tables
     
 
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Materials

Basic Protocol 1: Plasmid Purification by Alkaline-Lysis/Anion-Exchange Capture

 Materials
  • cDNA containing gene of interest
  • Plasmid with appropriate cis-acting elements (Fig. 5.10.1 and unit 5.2)
  • Competent E. coli cells (e.g., strain DH5-; Life Technologies)
  • LB medium (unit 5.2) containing antibiotics for selection (e.g, 100 µg/ml ampicillin, 40 µg/ml kanamycin, or 25 µg/ml tetracycline, depending on plasmid kit; all antibiotics available from Sigma)
  • Resuspension buffer (see recipe)
  • Lysis solution: 0.2 M NaOH/1% (w/v) SDS
  • Neutralization solution: 1.3 to 3.0 M potassium acetate, pH 4.8 to 5.5
  • Isopropanol
  • TE buffer (appendix 2E)
  • 80% ethanol
  • Sterile glass test tubes for bacterial culture
  • Environmental shaker (New Brunswick Scientific)
  • 3-liter Erlenmeyer flask
  • Beckman J2-21 centrifuge with JA-10 rotor or Sorvall RC-5B centrifuge with GS-3 rotor (or equivalent) and appropriate polycarbonate centrifuge bottles
  • UV/visible light spectrophotometer (e.g., Perkin-Elmer)
  • Additional reagents and equipment for ligation of linkers to cDNA (Klickstein and Neve, 1991), plasmid selection and insertion of DNA into plasmid vectors (unit 5.2), transformation of E. coli (unit 5.2), and purification of DNA by anion-exchange chromatography (Budelier and Schorr, 1998)

NOTE: Several DNA plasmid preparation kits are available commercially—e.g., Plasmid Maxi Kit (Qiagen), Wizard Maxipreps (Promega), and FlexiPrep Kit (Pharmacia Biotech). Kits include resuspension buffer, lysis solution, and neutralization solution as described in the protocol.

Basic Protocol 2: Transfection of Cells by Lipofection

 Materials
  • Chinese hamster ovary (CHO) cells (Table 5.9.1)
  • MEM medium with and without 10% FBS (see recipe)
  • Lipofectamine (Life Technologies; store up to 6 months at 4°C)
  • Plasmid DNA to be transfected (see Basic Protocol 1)
  • 100-mm tissue culture dishes or T-75 flasks
  • Polystyrene tubes
  • Additional reagents and equipment for growing mammalian cells in culture (appendix 3C)

Alternate Protocol 1: Transfection of Cells by Electroporation

 Additional Materials (also see Basic Protocol 2)
  • Electroporator and electroporation cuvettes with 0.4-cm electrode gap (Bio-Rad)
  • Additional reagents and equipment for growing mammalian cells in culture, trypsinizing cells, and counting viable cells by trypan blue exclusion (appendix 3C)

Basic Protocol 3: Selection for Neomycin Phosphotransferase (NPTII) with Geneticin (G418)

 Materials
  • Culture of transformed cells at 50% to 70% confluency, in T-25 or T-75 flasks (24 to 48 hr post-transfection; see Basic Protocol 2 or Alternate Protocol 1)
  • Selective medium: MEM medium (see recipe) containing 5% to 10% FBS and 0.1 to 1.0 mg/ml G418 (Geneticin, Life Technologies; add from 50 mg/ml stock prepared in 100 mM HEPES, pH 7.0 to 7.2; see Support Protocol 1 for optimization of concentration)
  • 96-well flat-bottom tissue culture plates
  • Inverted microscope
  • T-75 tissue culture flasks
  • Additional reagents and equipment for growing mammalian cells in culture, trypsinizing cells, and counting viable cells by trypan blue exclusion (appendix 3C)

Support Protocol 1: Determination of Background Sensitivity to G418

 Additional Materials (also see Basic Protocol 3)
  • Selective media containing various concentrations (100 to 1000 µg/ml in 100-µg/ml increments) of G418 (add from 50 mg/ml stock prepared in 100 mM HEPES, pH 7.0 to 7.2)
  • 100-mm tissue culture dishes

Alternate Protocol 2: Screening of Green Fluorescent Protein by Flow Cytometry

 Materials
  • Cells transformed with plasmid (see Basic Protocol 2 or Alternate Protocol 1) containing GFP reporter gene (pIRES1-EGFP from Clontech or pTracer-CMV from Invitrogen) at 50% to 70% confluency in T-25 or T-75 flasks
  • 1% (w/v) bovine serum albumin (BSA; Sigma) in PBS (appendix 2E)
  • 10× (0.05 mg/ml) propidium iodide stock (PI; Molecular Probes; optional)
  • Appropriate culture medium
  • Flow cytometer with cell sorting capability (FACS Vantage and FACSort from Becton Dickinson Immunocytometry Systems or EPICS Elite ESP cell sorter from Coulter Electronics or equivalent)
  • T-25 tissue culture flasks
  • Additional reagents and equipment for trypsinizing cells, counting viable cells by trypan blue exclusion, and growing mammalian cells in culture (appendix 3C) and flow cytometry (Robinson et al., 1998)

Support Protocol 2: Single-Cell Cloning

 Materials
  • Cells expressing gene product of interest (see Basic Protocol 3 or Alternate Protocol 1) growing in tissue culture flasks or dishes at 70% to 90% confluency
  • Appropriate culture medium
  • Coulter Counter or equivalent
  • 96-well tissue culture plates
  • Additional reagents and equipment for growing mammalian cells in culture, trypsinizing cells, and counting viable cells by trypan blue exclusion (appendix 3C)

Basic Protocol 4: Amplification of Dihydrofolate Reductase (DHFR) with Methotrexate (MTX)

 Materials
  • Culture of transformed cells at 50% to 70% confluency, in T-25 or T-75 flasks (24 to 48 hr post-transfection; see Basic Protocol 2 or Alternate Protocol 1)
  • Nucleoside-free MEM medium (see recipe but omit nucleosides) containing 10% FBS that has been dialyzed to remove nucleosides (HyClone)
  • 10 mM methotrexate (MTX) stock solution (Sigma; store up to 1 year at –20°C; thaw just before use)
  • 96-well flat-bottom tissue culture plates
  • 24-well tissue culture plates
  • T-25 tissue culture flasks
  • 100-mm tissue culture dishes
  • Additional reagents and equipment for growing mammalian cells in culture, trypsinizing cells, and counting viable cells by trypan blue exclusion (appendix 3C)

Basic Protocol 5: Adaptation of Suspension Cells to Production Medium Through Multiple Passaging

 Materials
  • Mid–log phase culture of stable-transfected cells in T-75 flask (or thawed 1-ml aliquot of cryopreserved cells; see Support Protocol 2), produced by DHFR selection/MTX amplification (see Basic Protocol 4) or other selection/amplification procedure
  • Nucleoside-free MEM medium (see recipe but omit nucleosides) containing 10% FBS that has been dialyzed to remove nucleosides (for DHFR selection/MTX amplification cells) or regular MEM medium (see recipe) containing 10% FBS (prepare as appropriate for cells produced by other selection/amplification procedures)
  • 10 mM methotrexate (MTX) stock solution (Sigma; store up to 1 year at –20°C; thaw just before use)
  • Dispase solution (Boehringer Mannheim)
  • DMEM/F12 custom-modified medium (see recipe) with 10%, 1%, and 0.5% dialyzed FBS
  • CD CHO medium (for DHFR systems; Life Technologies), Super CHO (for non-DHFR systems; Bio-Whittaker), or CHO-S-SFM (for non-DHFR systems; Life Technologies)—optional, for adaptation to serum-free medium
  • 1 g/liter Nucellin-Zn salt (recombinant insulin; Eli Lilly)—optional, for adaptation to serum-free medium
  • T-175 flasks
  • Sterile 45-ml polycarbonate screw-cap tubes
  • Inverted phase-contrast microscope
  • 250-ml shaker flasks
  • Platform shaker (New Brunswick Scientific)
  • Additional reagents and equipment for growing mammalian cells in culture, trypsinizing cells, and counting viable cells by trypan blue exclusion (appendix 3C), determining specific growth rate of cells (see Support Protocols 4, 5, and 9), determining specific productivity of cells producing heterologous protein (see Support Protocols 6 and 7), and freezing cells (see Support Protocol 2)

Basic Protocol 6: Growth of Cells in Batch Mode in Large-Scale Spinner Culture Vessels

 Materials
  • 1-ml cryovial or mid–log phase culture of suspension-adapted cells (see Basic Protocol 5)
  • Medium to which cells have been adapted (see Basic Protocol 5), supplemented with 4 mM l-glutamine and 4.5 to 5.5 g/liter d-glucose
  • Medical-grade, sterile-filtered 5% CO2/air mixture
  • Medical-grade, sterile-filtered 100% O2 (if necessary)
  • 250-ml screw-cap shaker flasks
  • Platform shaker (New Brunswick Scientific)
  • 1-, 5-, and 20-liter borosilicate glass spinner jars (Bellco Biotechnology)
  • Flat-plate stirrer platform (Bellco Biotechnology)
  • Peristaltic pump (head size 15, 16, 24; with 0 to 600 rpm capability; Watson-Marlow or Cole-Parmer)
  • Sterile silicone tubing (Pt-cured; size 15, 16, 24; Masterflex from Cole-Parmer)
  • Sterile 50-ml syringes
  • Dissolved oxygen probe (Ingold)
  • pH probe (Ingold or Broadley James)
  • Additional reagents and equipment for growing mammalian cells in culture and counting viable cells by trypan blue exclusion (appendix 3C), determining specific growth rate of cells (see Support Protocols 4, 5, and 9), and determining specific productivity of cells producing heterologous protein (see Support Protocols 6 and 7)

Basic Protocol 7: Growth of Cells in Large-Scale Batch Reactors

 Materials
  • Inoculum of mid–log phase cells in spinner jar (see Basic Protocol 6)
  • Ultrafiltered deionized water
  • Medium to which cells have been adapted (see Basic Protocol 5), supplemented with 8 mM l-glutamine and 4.5 to 5.5 g/liter d-glucose
  • Medical-grade, sterile-filtered 95% N2/5% CO2 and 95% air/5% CO2 mixtures and 100% oxygen
  • 10- to 100-liter bioreactor (New Brunswick Scientific, Bioengineering, Braun, New MBR, Applikon)
  • pH probe (Broadley James or Ingold), calibrated
  • Dissolved oxygen probe (Ingold), pretested
  • Autoclave large enough to accommodate bioreactor vessel (Finn Aqua)
  • Inoculum transfer bottle with bottom side port attached to sterile size 16 tubing (Bellco Biotechnology)
  • Sterile flexible disposable medium and harvest bags (Stedim Laboratories)
  • Additional reagents and equipment for counting viable cells by trypan blue exclusion (appendix 3C), determining specific growth rate of cells (see Support Protocols 4, 5 and 9) and determining specific productivity of cells producing heterologous protein (see Support Protocols 6 and 7)

Alternate Protocol 3: Growth of Cells in Continuous Culture in Bioreactors

 Additional Materials (also see Basic Protocol 7)
  • Bioreactor with accessories for continuous operation (consult New Brunswick Scientific, New MBR, Bioengineering AG, Braun, or other fermenter manufacturer; for perfusion operation where retention is required, use reactors with spin filter design, e.g., New MBR or Braun)
  • Sterile bags (Stedim Laboratories) or sterilized stainless steel containers for collection of medium

Basic Protocol 8: Harvesting a Secreted Product

 Materials
  • Cells in batch culture (see Basic Protocols 6 or 7 or Alternate Protocol 3)
  • Phosphate-buffered saline (PBS; appendix 2E)
  • TE buffer or PBS (appendix 2E)
  • Sterile bags (Stedim Laboratories)
  • Refrigerated centrifuge: Sorvall RC-5B or RC-3B, Beckman J2-21 or S600, or equivalent
  • Microfiltration system with membranes for cell concentration and debris/product separation (Sartorius, Pall-Filtron, or Millipore)
  • Depth filtration membranes for large-scale debris separation prior to sterile filtration (Cuno io-Cap 90 SP or equivalent products from Millipore or Sartorius)
  • Filter-sterilizing capsules (0.2-µm membrane; Sartorius, Pall, or Millipore)
  • Silicone tubing, autoclaved
  • Sterile polycarbonate containers
  • Ultrafiltration system with membranes for protein concentration (MWCO 10-kDa; Sartorius, Pall-Filtron, or Millipore)

Basic Protocol 9: Harvesting a Cell-Associated Product

 Materials
  • Cells in batch culture (see Basic Protocols 6 or 7 or Alternate Protocol 3)
  • Phosphate-buffered saline (PBS; appendix 2E)
  • Homogenization buffer (see recipe), 4°C
  • Cell homogenizer: e.g., Microfluidizer (Microfluidics), Tissumizer (Tekmar-Dohrmann), Dounce homogenizer (Bellco Biotechnology), or Manton-Gaulin-APV homogenizer (APV-Gaulin)
  • Additional reagents and equipment for centrifugation or cross-flow microfiltration of cell suspension (see Basic Protocol 8)

Support Protocol 3: Freezing Cells for Produciton of Cell Banks

 Materials
  • High-viability (>95%) log-phase culture of cells
  • Freezing medium: complete medium used for growing cells supplemented with 10% to 20% (v/v) FBS and 5% to 10% (v/v) DMSO (Sigma), 4°C
  • 45-ml sterile screw-cap tubes polycarbonate centrifuge tubes (Falcon from Becton Dickinson)
  • Sorvall T-6000B centrifuge (DuPont) or equivalent
  • 1.5-ml Nalgene cryotubes (Nunc)
  • Additional reagents and equipment for counting viable cells by trypan blue exclusion (appendix 3C)

Support Protocol 5: Graphical Determination of Specific Growth Rate of Cells

 Materials
  • Spreadsheet software with graphical output (e.g., Microsoft Excel or Lotus 123)

Support Protocol 7: Graphical Determination of Specific Productivity of Cells Producing Heterologous Protein

 Materials
  • Spreadsheet software with graphical output (e.g., Microsoft Excel or Lotus 123)

Support Protocol 8: Preparation of Samples for Product Assay

 Materials
  • Sample of cell culture (see Basic Protocols 6 or 7 or Alternate Protocol 3)
  • 0.9% NaCl, filter-sterilized, 4°C
  • Refrigerated centrifuge
  • Ultrasonic homogenizer (Misonix)

Support Protocol 9: Determination of Shaker Flask Growth Curve

 Additional Materials (also see Basic Protocol 6)
  • Thawed vial of cryopreserved cells (0.5 ml to 1 ml at 107 viable cells/ml) or aliquot of healthy cells in exponential growth phase (107 cells total in ~25 ml)
  • Additional reagents and equipment for determination of specific growth rate (see Support Protocols 4 and 5) and specific protein productivity of cells (see Support Protocols 6 and 7)
     
 
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Figures

  • Figure 5.10.1
    Expression vector elements for common transfection strategies. (A) Dual- and (B) single-plasmid vectors are shown for commercial vectors types described in Table 5.10.1. The active site–directed vectors (C) are reported throughout the literature (Lucas, 1996; Wurm et al., 1996); although not currently available as commercial catalog items, they may provide advantages in obtaining high expression levels. Abbreviations: IRES, internal ribosomal entry site.

  • Figure 5.10.2
    Typical arrangement of 20-liter spinner jar for batch cell culture.

  • Figure 5.10.3
    Compact-scale perfusion cell culture system. Shows typical connection of medium and product tanks to compact (100-liter) reactor. Simple pH, dissolved oxygen, and vessel weight control loops are illustrated. Medium and product vessels (for conditioned medium and/or cells) should be set up in a cold-box environment.

  • Figure 5.10.4
    Cell culture product recovery flow schemes for laboratory and pilot scale processes. Options for intracellular and secreted proteins are shown. For details, see Basic Protocol 8. Abbreviations: MF, microfiltration; TFF, tangential-flow filtration; UF, ultrafiltration.

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    Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
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    Stanley, P. 1989. Chinese hamster ovary cell mutants with multiple glycosylation defects for production of glycoproteins with minimal carbohydrate heterogeneity. Mol. Cell Biol. 9:377-383.
    Stanley, P. and Ioffe, E. 1995. Glycosyltransferase mutants: Key to new insights in glycobiology. FASEB J. 9:1436-1444.
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 Key References
    Butler, M. (ed.). 1991. Mammalian Cell Biotechnology. IRL Press, Oxford.

Excellent introductory background with protocol and tips.

    Freshney, R.I. (ed.). 1992. Animal Cell Culture. (2nd ed.), IRL Press, Oxford.

Practical guide to cell culture with useful protocols and tips.

    Kriegler, 1990. See above

Comprehensive manual for molecular biology.

     
 
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